Rename REAMDE to README.md

[nit.git] / src / metrics / mendel_metrics.nit

diff --git a/src/metrics/mendel_metrics.nit b/src/metrics/mendel_metrics.nit
index 1ee1db2..3209720 100644 (file)
--- a/src/metrics/mendel_metrics.nit
+++ b/src/metrics/mendel_metrics.nit
@@ -48,6 +48,9 @@ import mclasses_metrics
 import modelize
 
 redef class ToolContext
 import modelize
 
 redef class ToolContext

+       # Compute MENDEL metrics.
+       #
+       # See `mendel_metrics` module documentation.

        var mendel_metrics_phase: Phase = new MendelMetricsPhase(self, null)
 end
 
        var mendel_metrics_phase: Phase = new MendelMetricsPhase(self, null)
 end
 

@@ -81,24 +84,28 @@ private class MendelMetricsPhase
                metrics.collect(mclasses)
                if csv then metrics.to_csv.save("{out}/mendel.csv")
 
                metrics.collect(mclasses)
                if csv then metrics.to_csv.save("{out}/mendel.csv")
 

-               print toolcontext.format_h4("\tlarge mclasses (threshold: {cnblp.threshold})")
-               for mclass in cnblp.above_threshold do
-                       print toolcontext.format_p("\t   {mclass.name}: {cnblp.values[mclass]}")
+               var threshold = cnblp.threshold
+               print toolcontext.format_h4("\tlarge mclasses (threshold: {threshold})")
+               for mclass in cnblp.sort do
+                       var val = cnblp.values[mclass]
+                       if val.to_f < threshold then break
+                       print toolcontext.format_p("\t   {mclass.name}: {val}")

                end
 
                end
 

-               print toolcontext.format_h4("\tbudding mclasses (threshold: {cnvi.threshold})")
-               for mclass in cnvi.above_threshold do
-                       print toolcontext.format_p("\t   {mclass.name}: {cnvi.values[mclass]}")
+               threshold = cnvi.threshold
+               print toolcontext.format_h4("\tbudding mclasses (threshold: {threshold})")
+               for mclass in cnvi.sort do
+                       var val = cnvi.values[mclass]
+                       if val.to_f < threshold then break
+                       print toolcontext.format_p("\t   {mclass.name}: {val}")

                end
 
                end
 

-               print toolcontext.format_h4("\tblooming mclasses (threshold: {cnvs.threshold})")
-               for mclass in cnvs.above_threshold do
-                       print toolcontext.format_p("\t   {mclass.name}: {cnvs.values[mclass]}")
-               end
-
-               print toolcontext.format_h4("\tblooming mclasses (threshold: {cnvs.threshold})")
-               for mclass in cnvs.above_threshold do
-                       print toolcontext.format_p("\t   {mclass.name}: {cnvs.values[mclass]}")
+               threshold = cnvs.threshold
+               print toolcontext.format_h4("\tblooming mclasses (threshold: {threshold})")
+               for mclass in cnvs.sort do
+                       var val = cnvs.values[mclass]
+                       if val.to_f < threshold then break
+                       print toolcontext.format_p("\t   {mclass.name}: {val}")

                end
 
                if csv then
                end
 
                if csv then

@@ -130,8 +137,8 @@ class CBMS
        redef fun name do return "cbms"
        redef fun desc do return "branch mean size, mean number of introduction available among ancestors"
 
        redef fun name do return "cbms"
        redef fun desc do return "branch mean size, mean number of introduction available among ancestors"
 

+       # Mainmodule used to compute class hierarchy.

        var mainmodule: MModule
        var mainmodule: MModule

-       init(mainmodule: MModule) do self.mainmodule = mainmodule

 
        redef fun collect(mclasses) do
                for mclass in mclasses do
 
        redef fun collect(mclasses) do
                for mclass in mclasses do

@@ -150,8 +157,8 @@ class CNVI
        redef fun name do return "cnvi"
        redef fun desc do return "class novelty index, contribution of the class to its branch in term of introductions"
 
        redef fun name do return "cnvi"
        redef fun desc do return "class novelty index, contribution of the class to its branch in term of introductions"
 

+       # Mainmodule used to compute class hierarchy.

        var mainmodule: MModule
        var mainmodule: MModule

-       init(mainmodule: MModule) do self.mainmodule = mainmodule

 
        redef fun collect(mclasses) do
                var cbms = new CBMS(mainmodule)
 
        redef fun collect(mclasses) do
                var cbms = new CBMS(mainmodule)

@@ -179,8 +186,8 @@ class CNVS
        redef fun name do return "cnvs"
        redef fun desc do return "class novelty score, importance of the contribution of the class to its branch"
 
        redef fun name do return "cnvs"
        redef fun desc do return "class novelty score, importance of the contribution of the class to its branch"
 

+       # Mainmodule used to compute class hierarchy.

        var mainmodule: MModule
        var mainmodule: MModule

-       init(mainmodule: MModule) do self.mainmodule = mainmodule

 
        redef fun collect(mclasses) do
                var cnvi = new CNVI(mainmodule)
 
        redef fun collect(mclasses) do
                var cnvi = new CNVI(mainmodule)